** The following information is outdated. Please refer to here for the latest information. ** **
E-Cell4 is used by checking out the win32 branch. If necessary, install and use Git yourself: https://github.com/ecell/ecell4
The following is what I used for the build:
Install Python and Visual C ++ normally.
Unzip GSL, stdint, Boost to a suitable location.
Extract hdf5-1.8.14-win32-vs2012-shared.zip and run HDF5-1.8.14-win32.exe to install it. It is optional whether to pass the installation location or path.
C: \ path \ to \ ecell4 \ ecell4 \ core \ config.h.win32 is called C: \ path \ to \ ecell4 \ ecell4 \ core \ config.h Save as. Or create config.h under C: \ path \ to \ ecell4 \ ecell4 \ core with the following content:
#ifndef __ECELL4_CONFIG_H #define __ECELL4_CONFIG_H #define HAVE_BOOST_UNORDERED_MAP_HPP 1 #define HAVE_BOOST_FUNCTIONAL_HASH_HPP 1 #endif /* __ECELL4_CONFIG_H */
5. C: \\ path \\ to \\ ecell4 \\ ecell4 \\ egfrd \\ config.h.win32 is called C: \\ path \\ to \\ ecell4 \\ ecell4 \\ egfrd \\ config.h Save as.
6. Extract virtualenv-1.11.6.tar.gz so that Python can be executed:
```
C:\path\to\virtualenv-1.11.6> python virtualenv.py C:\path\to\myenv
C: \ path \ to \ myenv can be anywhere, but note that it won't work if the path contains spaces (such as username).
Go to C: \ path \ to \ myenv and install Cython and Numeric Python as follows:
C:\path\to\myenv> Scripts\activate.bat (myenv) C:\path\to\myenv> pip install cython (myenv) C:\path\to\myenv> pip install numpy
8. Under virtualenv environment:
Instead of calling make_sjy_table.py and make_cjy_table.py that use scipy, you can get the separately created SphericalBesselTable.hpp and CylindricalBesselTable.hpp and place them under the C: \ path \ to \ ecell4 \ ecell4 \ egfrd directory.
```
(myenv) C:\path\to\myenv> cd C:\path\to\ecell4\python
(myenv) C:\path\to\ecell4\python> python setup.py build_ext -IC:\path\to\boost_1_55_0;C:\path\to\gsl\include;C:\path\to\HDF5_Group\HDF\1.8.14\include;C:\path\to\stdint-20070624 -LC:\path\to\gsl\lib;C:\path\to\HDF5_Group\HDF\1.8.14\lib install
(myenv) C:\path\to\ecell4\python> python samples\simple.py
Package creation continues above:
(myenv) C:\path\to\ecell4\python> pip install wheel (myenv) C:\path\to\ecell4\python> python setup.py bdist_wheel
You should now have WHL under C: \\ path \\ to \\ ecell4 \\ python \\ dist.
2. Download and unzip the following
https://www.dropbox.com/s/79jrmw1vtv61e6t/ecell4-0.0.0-cp27-none-win32-whl.zip
3. Under the expanded ecell4-0.0.0-cp27-none-win32-whl directory:
```
(myenv) C:\path\to\ecell4-0.0.0-cp27-none-win32-whl> pip install ecell4-0.0.0-cp27-none-win32.whl
Since the dll is required at runtime, install the HDF5 binary as described above and pass it through the path if necessary.
(myenv) C:\path\to\ecell4-0.0.0-cp27-none-win32-whl> set PATH=%PATH%;C:\path\to\HDF5_Group\HDF\1.8.13\bin
5.Try to do it below.Hopefully test.h5 should be created:
```
(myenv) C:\path\to\ecell4-0.0.0-cp27-none-win32-whl> python simple.py
6.Introduced IPython Notebook,to start:
```
(myenv) C:\path\to\myenv> pip install ipython[notebook]
(myenv) C:\path\to\myenv> ipython notebook
#Points of concern
1.Do I need to create a package when building HDF5?? ALL_The dll was created just by building BUILD, but it didn't work..You need to install NSIS to make a package,Looks useless.Well it's good because it's easy to redistribute.
3.Warning that appears in large numbers at build time.It seems to be mainly about implicit typecasting.I want to crush it someday.
<stdint.h>about.Mendoi to install separately.I don't know what to do,this is.
config.h is not good.Boost unordered_map is not very well implemented, Visual C++I want to think of an alternative for. ->Perhaps, std::tr1 can be used.
6.IPython will be available in pip.IPython Notebook also pyzmq, jinja2,You can do it by installing tornade from pip,Some of these may need to be built.I hope it can be done with Wheel, but I have not confirmed.Anaconda's IPython is MinGW32, so it probably won't work.
#About HDF5 own build
Things necessary:
1.HDF5 Visual C ++++Build your own in 2008.First unzip the file,Next, create another directory for building.(hdf5-1.8.13-BUILD).
2.CMake 3 from the start menu etc..0.0>CMake (cmake-gui)To start. "Where is the source code:"To C:\path\to\hdf5-1.8.13, "Where to build the binaries"To C:\path\to\hdf5-1.8.13-Specify BUILD.Press the Configure button below.A dialog opens, "Specify the generator for this project"Because it is asked, "Visual Studio 9 2008"so"Use default native compilers"Select"Finish".
3.Entry is automatically displayed, but from this, BUILD_SHARED_LIBS, HDF5_BUILD_CPP_LIB, HDF5_PACKAGE_Set EXTLIBS to True.Other than that, you can leave it as it is.afterwards,Press the Generate button.
5.ALL from the explorer on the left_Right click on BUILD,Build.after,Right click on PACKAGE,Buildする. C:\path\to\hdf5-1.8.13-Below BUILD_CPack_Packages\win\NSIS\HDF5-1.8.13-win is done and hdf5 is under bin.OK if dll is created(hdf5_D.If it is dll etc., check the above solution configuration).
#About patches
Less than,Old information.Now see the difference between win32 branch and master.
https://github.com/ecell/ecell4/compare/win32
(Old)About patches.
https://gist.github.com/kaizu/00e480fb3285b1296485
1.why, gsl_pow_2, gsl_pow_3 falls on link. gsl_pow_Can be used with int.Doesn't it make sense.
2.Problem that typeof cannot be used. GetType,I can use typeid, but I'm not sure.If there is no change in gsl, there is no problem, so I hard-coded the type for the time being.
4.cbrt is math.Problems not in h.Implemented instead with pow.At least inline.
5.rint is math.Problems not in h.It looks like you can implement it yourself, boost/numeric/interval/detail/msvc_rounding_control.It seems that hpp is switching that side well, so I referred to that.
7.The gslcblas library name is different. gslcblas->cblas.
__PRETTY_FUNCTION__Problems that cannot be used.It's just an error message__FUNCTION__Just use.9.Deleted unnecessary typename.It feels good to commit normally.Confirm later.
10.problem that vsnprintf is not std.
12.Regex for windows.Problem without h.Boost regex requires binaries, so avoid Unix standard regex.I tried to use h,Windows is not Unix in the first place, so regex.no h.On the other hand, Visual C++Regex is implemented as standard in,API seems to be exactly the same as Boost regex(Or rather std::tr1)So I just solved the namespace etc. and passed for the time being.Results need to be tested.
#Reference link
http://homepage2.nifty.com/nonnon/Chinamini/20110001/20110307.html
http://david.geldreich.free.fr/dev.html
http://www.kijineko.co.jp/node/63
http://msdn.microsoft.com/ja-jp/library/1deeycx5%28v=vs.90%29.aspx
http://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/COPYING
http://qiita.com/toruuetani/items/b0000e9f5c89a350d4f8