[LINUX] How to convert from .mgz to .nii.gz



The file output by FreeSurfer contains a fractionated cortex and white matter image (VOI).

However, the extension mgz of those files is a FreeSurfer-specific extension and is inconsistent with other software.

Therefore, the extension of aparc + aseg.mgz, which is the output file of FreeSurfer, is converted to .nii.gz.


See How to convert .mgz to .nii.gz for detailed explanation and code.

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